Dear Amber users,
The pdb file i obtained by converting the cif to pdb file using open bable programme, when I ran amber to do unit cell as you told me it generated an empty pdb file, how i can solve this problem, is there any other programme that convert cif to pdb.
regards
________________________________________
From: David A Case [case.biomaps.rutgers.edu]
Sent: 23 April 2013 01:56
To: AMBER Mailing List
Subject: Re: [AMBER] carbohydrate-GLYCAM 06-cellulose Iā
On Mon, Apr 22, 2013, Lachele Foley wrote:
> >
> > Am trying to build multi chain of cellulose Iā , I got the data from
> > x-ray and it only showed me two glucose molecules in a crystal unit,
> > i would like to get help on how to use these data and replicate it to
> > get chains.
If the x-ray information is in a PDB file (e.g. from www.rcsb.org) or a
compatible one, you can use the methods in Tutorial A13 to build lattices.
I don't think Amber has crystal-lattice building methods for other input
formats.
...dac
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Received on Fri Apr 26 2013 - 06:30:04 PDT
