no changes. I actually untarred amber12 and ambertools12 and started from
scratch. then i tried to do the update to ambertools13.
I had some sort of error regarding bugfix16 that I couldn't figure out so I
started from scratch.
On Mon, Apr 22, 2013 at 6:39 PM, Jason Swails <jason.swails.gmail.com>wrote:
> On Mon, Apr 22, 2013 at 6:32 PM, Jonathan Gough
> <jonathan.d.gough.gmail.com>wrote:
>
> > Here is what I get. Any other info I should provide?
> >
> > jonathans-Mac-Pro:amber12 jonathan$ ./update_amber --check-updates
> > Checking for available patches online. This may take a few seconds...
> > Major version upgrade available:
> > AmberTools 12 to AmberTools 13 upgrade
> > Type './update_amber --upgrade' to upgrade to AmberTools 13.
> >
> > Available AmberTools 12 patches:
> >
> > No patches available
> >
> > Available Amber 12 patches:
> >
> > bugfix.16 (modifies sander/PBSA)
> > Released on Apr. 4, 2013 (written by Jason Swails)
> > Description:
> > This updates the sander/PBSA tests for the AmberTools 13 version of
> > PBSA
> >
> >
> > jonathans-Mac-Pro:amber12 jonathan$ ./update_amber --upgrade
> > You are about to perform a major upgrade. This is NOT reversible.
> >
> > Do you wish to continue? (y/N) y
> >
> >
> > NOTE: This upgrade cannot be reversed!
> > Downloading upgrade.patch.bz2 (23.88 MB)
> > Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::::] 100.0%
> > Done.
> > Attempting the upgrade. Please wait...
> > Upgrade patch failed. Upgrade not performed.
> > jonathans-Mac-Pro:amber12 jonathan$
> >
>
> Have you made any changes to your AmberTools source code? If so, the
> upgrade is going to fail and you'll have to download the
> AmberTools13.tar.bz2 file... (or untar a fresh AmberTools12 tarball and
> upgrade that).
>
> All the best,
> Jason
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Apr 22 2013 - 16:00:03 PDT
