Have you tried loading inpcrd as a restart file into VMD?
Hai
On Mon, Apr 22, 2013 at 11:50 AM, Jonathan Gough <jonathan.d.gough.gmail.com
> wrote:
> Dear peoples,
>
> I took a pdb, cleaned it up. loaded it into leap, saved a pdb, saved the
> inpcrd and prmtop files.
>
> When I load the pdb, everything is fine. when I lod the inpcrd and prmtop,
> it looks like a single Nitrogen is stretched out into infinity...
>
> I can't seem to figure out what the deal is. obviously (maybe) attempting
> minimization or heating or anything else makes a huge mess.
>
> Does anyone have any insight as to where I am making the mistake?
>
> I can provide lots more details if it's not an obvious error.
>
> Thank,
> Jonathan
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Received on Mon Apr 22 2013 - 12:30:03 PDT
