Does wget or curl work for you in the terminal? If not you should contact
your sysadmin to help you with the proxy settings.
-Dan
On Wed, Jan 30, 2013 at 1:03 PM, Vaibhav Dixit <vaibhavadixit.gmail.com>wrote:
> Please suggest on this patching problem, I'm unable to install Amber12.
> Thanks in advance.
>
> On Tue, Jan 29, 2013 at 9:49 AM, Vaibhav Dixit <vaibhavadixit.gmail.com
> >wrote:
>
> > Dear Amber community members,
> > I'm facing a problem while patching amber12 updates using the command
> > ---------
> > gm.linux-rfml:/usr/local/amber12> ./patch_amber.py --update-tree
> > Error: No internet access!
> > -----------
> > I tried suggestions given here,
> > http://archive.ambermd.org/201208/0427.html
> >
> > My proxy setting are correct (I'm able to use internet on the same PC and
> > I have set the path with proper user name and password (export
> http_proxy="
> > http://username:password.proxy.iisc.ernet.in:3128"). But this did not
> > work, then I tried *./patch_amber.py --update-tree --timeout 20, but this
> > also gave the same result*
> >
> > After downloading all the patches, I have made following changes to the
> > patch_amber.py file, *but I'm unable to understand which line in this
> > file should I comment out*, so that the patch file are used directly from
> > the folder specified.
> > -----------
> > BUGFIX_PREFIX = 'bugfix'
> > patch_locs = ['file:///home/gm/bugfixes/AmberTools/12.0/',
> > 'file:///home/gm/bugfixes/12.0/']
> > -----------
> >
> > --
> > With regards
> >
> > Dr. Dixit Vaibhav Anil (Dr. D.S.Kothari Fellow)
> > Department of Inogranic and Physical Chemistry
> > Indian Institute of Science (IISc), Bangalore-560012
> > Karnataka.
> > Phone (Mobile): +919915214408, +91-7709129400.
> > E-mail: vaibhavadixit.gmail.com, vaibhavadixit.ipc.iisc.ernet.in
> > http://www.iisc.ernet.in/
> > <http://www.niper.nic.in>
>
>
>
>
> --
> With regards
>
> Vaibhav A. Dixit
> Ph.D.
> Department of Medicinal Chemistry
> Natl. Inst. Pharm. Edu. & Res. (NIPER)
> Sector 67, Phase X, S.A.S. Nagar (Mohali)
> Punjab -160 062 INDIA
> Phone (Mobile): +919915214408, +91-7709129400.
> E-mail: vaibhavadixit.gmail.com
> www.niper.nic.in
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Dr. Daniel J. Sindhikara <http://www.dansindhikara.com/Information.html>
Ritsumeikan University <http://www.ritsumei.ac.jp/eng/>
sindhikara.gmail.com <http://www.dansindhikara.com>
--
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Received on Tue Jan 29 2013 - 21:00:02 PST
