Please suggest on this patching problem, I'm unable to install Amber12.
Thanks in advance.
On Tue, Jan 29, 2013 at 9:49 AM, Vaibhav Dixit <vaibhavadixit.gmail.com>wrote:
> Dear Amber community members,
> I'm facing a problem while patching amber12 updates using the command
> ---------
> gm.linux-rfml:/usr/local/amber12> ./patch_amber.py --update-tree
> Error: No internet access!
> -----------
> I tried suggestions given here,
> http://archive.ambermd.org/201208/0427.html
>
> My proxy setting are correct (I'm able to use internet on the same PC and
> I have set the path with proper user name and password (export http_proxy="
> http://username:password.proxy.iisc.ernet.in:3128"). But this did not
> work, then I tried *./patch_amber.py --update-tree --timeout 20, but this
> also gave the same result*
>
> After downloading all the patches, I have made following changes to the
> patch_amber.py file, *but I'm unable to understand which line in this
> file should I comment out*, so that the patch file are used directly from
> the folder specified.
> -----------
> BUGFIX_PREFIX = 'bugfix'
> patch_locs = ['file:///home/gm/bugfixes/AmberTools/12.0/',
> 'file:///home/gm/bugfixes/12.0/']
> -----------
>
> --
> With regards
>
> Dr. Dixit Vaibhav Anil (Dr. D.S.Kothari Fellow)
> Department of Inogranic and Physical Chemistry
> Indian Institute of Science (IISc), Bangalore-560012
> Karnataka.
> Phone (Mobile): +919915214408, +91-7709129400.
> E-mail: vaibhavadixit.gmail.com, vaibhavadixit.ipc.iisc.ernet.in
> http://www.iisc.ernet.in/
> <http://www.niper.nic.in>
--
With regards
Vaibhav A. Dixit
Ph.D.
Department of Medicinal Chemistry
Natl. Inst. Pharm. Edu. & Res. (NIPER)
Sector 67, Phase X, S.A.S. Nagar (Mohali)
Punjab -160 062 INDIA
Phone (Mobile): +919915214408, +91-7709129400.
E-mail: vaibhavadixit.gmail.com
www.niper.nic.in
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Received on Tue Jan 29 2013 - 20:30:02 PST
