To get the best performance, you need to use Amber version 12.
On Jan 11, 2013 11:01 PM, "Daniel Sindhikara" <sindhikara.gmail.com> wrote:
> If convenience is the reason why you want to do it in AMBER9, I suggest you
> to
> consider that it is very much not trivial to implement and test a new
> dynamics method.
> Since it is available in AMBER12, for the cost of the upgrade it could save
> you several months worth
> of programming and testing.
>
>
>
>
> On Sat, Jan 12, 2013 at 1:30 PM, pooja chahal <chahal.pooja.rs.gmail.com
> >wrote:
>
> > I don't have AMBER 12 with me and i think right now it won't be possible
> to
> > install AMBER 12. I can implement in AMBER 9 itself but i am not sure how
> > to do it. Can you please suggest way to implement it in AMBER 9.
> >
> > On Fri, Jan 11, 2013 at 6:57 PM, Jason Swails <jason.swails.gmail.com
> > >wrote:
> >
> > > Amber 12 has AMD capabilities in sander, pmemd, and pmemd.cuda. Unless
> > > you're ready to implement AMD on your own inside Amber 9, you should
> > > upgrade to Amber 12.
> > >
> > > HTH,
> > > Jason
> > >
> > > On Fri, Jan 11, 2013 at 5:28 AM, pooja chahal <
> chahal.pooja.rs.gmail.com
> > > >wrote:
> > >
> > > > Dear,
> > > > I want to simulate a protein using Accelerated Molecular Dynamics
> and I
> > > > have AMBER 9 installed in my machine. In short I want to do it on
> > AMBER.
> > > > Can anyone suggest me how to do it? or Is there any way to perform
> this
> > > in
> > > > any version of AMBER?
> > > > Thanks in advance.
> > > > _______________________________________________
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> > > > AMBER.ambermd.org
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> > > >
> > >
> > >
> > >
> > > --
> > > Jason M. Swails
> > > Quantum Theory Project,
> > > University of Florida
> > > Ph.D. Candidate
> > > 352-392-4032
> > > _______________________________________________
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> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > _______________________________________________
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Dr. Daniel J. Sindhikara <http://www.dansindhikara.com/Information.html>
> Ritsumeikan University <http://www.ritsumei.ac.jp/eng/>
> sindhikara.gmail.com <http://www.dansindhikara.com>
> --
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Received on Fri Jan 11 2013 - 21:30:03 PST
