If you have the physics and the math and the programming skills, then
all you need is to understand the existing code. If you study that for
a day you should start to get the lay of the land.
Bill
pooja chahal <chahal.pooja.rs.gmail.com> wrote:
> I don't have AMBER 12 with me and i think right now it won't be possible to
> install AMBER 12. I can implement in AMBER 9 itself but i am not sure how
> to do it. Can you please suggest way to implement it in AMBER 9.
>
> On Fri, Jan 11, 2013 at 6:57 PM, Jason Swails <jason.swails.gmail.com>wrote:
>
> > Amber 12 has AMD capabilities in sander, pmemd, and pmemd.cuda. Unless
> > you're ready to implement AMD on your own inside Amber 9, you should
> > upgrade to Amber 12.
> >
> > HTH,
> > Jason
> >
> > On Fri, Jan 11, 2013 at 5:28 AM, pooja chahal <chahal.pooja.rs.gmail.com
> > >wrote:
> >
> > > Dear,
> > > I want to simulate a protein using Accelerated Molecular Dynamics and I
> > > have AMBER 9 installed in my machine. In short I want to do it on AMBER.
> > > Can anyone suggest me how to do it? or Is there any way to perform this
> > in
> > > any version of AMBER?
> > > Thanks in advance.
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> >
> >
> >
> > --
> > Jason M. Swails
> > Quantum Theory Project,
> > University of Florida
> > Ph.D. Candidate
> > 352-392-4032
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
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Received on Fri Jan 11 2013 - 21:30:02 PST
