If convenience is the reason why you want to do it in AMBER9, I suggest you
to
consider that it is very much not trivial to implement and test a new
dynamics method.
Since it is available in AMBER12, for the cost of the upgrade it could save
you several months worth
of programming and testing.
On Sat, Jan 12, 2013 at 1:30 PM, pooja chahal <chahal.pooja.rs.gmail.com>wrote:
> I don't have AMBER 12 with me and i think right now it won't be possible to
> install AMBER 12. I can implement in AMBER 9 itself but i am not sure how
> to do it. Can you please suggest way to implement it in AMBER 9.
>
> On Fri, Jan 11, 2013 at 6:57 PM, Jason Swails <jason.swails.gmail.com
> >wrote:
>
> > Amber 12 has AMD capabilities in sander, pmemd, and pmemd.cuda. Unless
> > you're ready to implement AMD on your own inside Amber 9, you should
> > upgrade to Amber 12.
> >
> > HTH,
> > Jason
> >
> > On Fri, Jan 11, 2013 at 5:28 AM, pooja chahal <chahal.pooja.rs.gmail.com
> > >wrote:
> >
> > > Dear,
> > > I want to simulate a protein using Accelerated Molecular Dynamics and I
> > > have AMBER 9 installed in my machine. In short I want to do it on
> AMBER.
> > > Can anyone suggest me how to do it? or Is there any way to perform this
> > in
> > > any version of AMBER?
> > > Thanks in advance.
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> >
> >
> >
> > --
> > Jason M. Swails
> > Quantum Theory Project,
> > University of Florida
> > Ph.D. Candidate
> > 352-392-4032
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Dr. Daniel J. Sindhikara <http://www.dansindhikara.com/Information.html>
Ritsumeikan University <http://www.ritsumei.ac.jp/eng/>
sindhikara.gmail.com <http://www.dansindhikara.com>
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Received on Fri Jan 11 2013 - 21:00:04 PST
