[AMBER] Help with ncsu_abmd flooding mode

From: Fabrício Bracht <bracht.iq.ufrj.br>
Date: Thu, 16 Aug 2012 18:15:09 -0300

Hello Amber folks.
Is it possible to use the LCOD variable with ncsu_abmd? If so, are the
min and max variables required?

Secondly. I am having some trouble with the mdin file for the
ncsu_abmd simulation. My file goes like this:
Parameters for qmmm md run
 &cntrl
.....parameters for md simulation...
/
 &qmmm
......parameters for the qmmm part.....
/
ncsu_abmd
       mode=FLOODING
        monitor_file='abmd.txt'
        monitor_freq=50
        timescale=10.0
.....and the rest of the variables (this is what the first two
questions of the email adress)

Once I run sander, the following error show up on the mdout file.
 ** NCSU-Error ** : 'md_qmmm.in', line:25, col:1 : unexpected character

Line 25 is the that specifies: ncsu_abmd

Any help here would be great
Thank you
Fabrício Bracht

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Received on Thu Aug 16 2012 - 14:30:03 PDT
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