hi,
i believe openbabel can convert from mol2 to pdb. i think it will also sort
the ligand out. win & linux versions are available.
best regards,
gt
On 22 May 2012 04:46, Chris Chris <alpharecept.yahoo.com> wrote:
> I am trying to convert a mol2 file into a pdb (using Vega ZZ.). I start
> with test.mol2- which has both the ligand and and the protein- but when I
> save as a pdb in Vega ZZ (test_vega.pdb), only the protein is written in
> the pdb and the ligand is not included. I notice that the connect info in
> the mol2 (test.mol2) comes before the ligand coordinates- does the connect
> information cause the reading to stop? I want to put this complex into
> antechamber but I have been having problems generating the pdb file for the
> complex.
>
> Thanks for any help
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Received on Thu May 24 2012 - 01:30:02 PDT
