I will look into this in a couple weeks when I get a chance. As a temporary workaround, you can use the -nobintraj flag for configure and see if that helps.
However, you won't be able to read or write netcdf files using any Amber/AmberTools program.
Hth,
Jason
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
On May 21, 2012, at 9:12 AM, Arthur Roberts <audie.uga.edu> wrote:
> Hi, all.
>
> Thanks for the info. I appreciate your help. However, I still get the
> following errors, when I try to install on Lion Mac OSX:
>
> bintraj.f90:558.18:
>
> call checkerror(nf90_put_var(ncid, var_id, buf(:,:), &
> 1
> Error: Generic function 'nf90_put_var' at (1) is not consistent with a
> specific intrinsic interface
> bintraj.f90:450.18:
>
> call checkerror(nf90_put_var(mdcrd_ncid, coord_var_id, buf(:,:), &
> 1
> Error: Generic function 'nf90_put_var' at (1) is not consistent with a
> specific intrinsic interface
> bintraj.f90:220.22:
>
> call checkerror(nf90_put_att(mdcrd_ncid, mdcrd_veloc_var_id, &
> 1
> Error: Generic function 'nf90_put_att' at (1) is not consistent with a
> specific intrinsic interface
> bintraj.f90:316.20:
>
> call checkerror(nf90_put_att(mdvel_ncid, mdvel_veloc_var_id, &
> 1
> Error: Generic function 'nf90_put_att' at (1) is not consistent with a
> specific intrinsic interface
> make[2]: *** [bintraj.o] Error 1
> make[1]: *** [install] Error 2
> make: *** [serial] Error 2
>
> Much appreciated,
> Audie
>
>
> On 5/20/12 7:52 AM, case wrote:
>> On Sat, May 19, 2012, Arthur Roberts wrote:
>>> However, I get the following error:
>>>
>>> gfortran -c -O3 -mtune=generic -ffree-form -o mbar.o _mbar.f
>>> cpp -traditional -P -DBINTRAJ bintraj.f> _bintraj.f
>>> gfortran -c -O3 -mtune=generic -ffree-form -o bintraj.o _bintraj.f
>>> _bintraj.f:403.25:
>>>
>>> call checkerror(nf90_put_att(vel_ncid, VelocVarID,
>>> "scale_factor",&
>>> 1
>>> Error: Generic function 'nf90_put_att' at (1) is not consistent with a
>>> specific intrinsic interface
>> There have been two separate reports about this on Lion. The full line
>> in bintraj.F90 is
>>
>> call checkNCerror(nf90_put_att(vel_ncid, VelocVarID, "scale_factor",&
>> 20.455), "define velocity scale_factor")
>>
>> I don't have Lion myself, but suggest putting quotes around "20.455" to see
>> if that helps. (Lack of quotes seems to be the distinguishing feature of this
>> call to nf90_put_att compared to all the others.
>>
>> (Similar instructions for earlier versions of Amber.)
>>
>> Of course, this will have to be tested for functionality as well.
>>
>> ....dac
>>
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>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>
>
> --
> Dr. Arthur "Audie" Roberts, Ph.D.
> University of Georgia
> Department of Pharmaceutical and Biomedical Sciences
> 250 W. Green St.
> Pharmacy South, Room 424
> Athens, GA 30602
> email: audie.uga.edu
> alt: aroberts99163.yahoo.com
> office: 706-542-7787
> lab: 706-542-5979
> fax: 706-542-5358
> cell: 206-850-7468
> skype=aroberts92122
> For urgent matters, text me at 206-850-7468.
>
>
>
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Received on Sun May 20 2012 - 19:00:03 PDT