Re: [AMBER] How can I fix two ends of DNA?

From: mehdi bagherpoor <ms.nightsky.gmail.com>
Date: Tue, 10 Apr 2012 03:38:50 +0430

On Mon, Apr 9, 2012 at 7:38 AM, Jason Swails <jason.swails.gmail.com> wrote:

> Dave's advice is good, I just had one minor addition.
>
> On Sun, Apr 8, 2012 at 6:20 AM, mehdi bagherpoor <ms.nightsky.gmail.com
> >wrote:
> >
> > /
> > Hold the DNA fixed
> > 10
> > RES 1
> >
>
> This group input is wrong. You need to specify an atom range. If you wish
> to select a single atom, select it like this:
>
> RES 1 1
>
> Hold the DNA fixed
> > 10
> > RES 34
> >
>
> Here, too, this line needs to be
>
> RES 34 34
>
> HTH,
> Jason
>



Hello Jason
Thanks

but in Amber10 Manual at page 267 has written for sample:

Input 1:
  Title one
  RES 1 5
  END
  Title two
  RES 6
  END
  END


>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
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>
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Received on Mon Apr 09 2012 - 16:30:03 PDT
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