Re: [AMBER] How can I fix two ends of DNA?

From: Jason Swails <jason.swails.gmail.com>
Date: Sun, 8 Apr 2012 23:08:09 -0400

Dave's advice is good, I just had one minor addition.

On Sun, Apr 8, 2012 at 6:20 AM, mehdi bagherpoor <ms.nightsky.gmail.com>wrote:
>
> /
> Hold the DNA fixed
> 10
> RES 1
>

This group input is wrong. You need to specify an atom range. If you wish
to select a single atom, select it like this:

RES 1 1

 Hold the DNA fixed
> 10
> RES 34
>

Here, too, this line needs to be

RES 34 34

HTH,
Jason 

-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Sun Apr 08 2012 - 20:30:03 PDT
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