I'm not sure, but I suspect you can get it working by doing something like
-o stdout
Then instead of sending the output to the file, it will just print it on
the screen. If you want both, I'm sure there is a way to get that to
happen, but I'm not sure these are AMBER specific questions (at least in
the way I'm answering it), but more linux shell questions.
~Aron
On Sun, Apr 8, 2012 at 9:10 AM, Acoot Brett <acootbrett.yahoo.com> wrote:
> Dear All,
>
> I have tried to use tail, but it does not work
>
> I use the following command, is anything wrong?
> "$AMBERHOME/exe/sander -O -i polyAT_vac_md1_12Acut.in -o
> polyAT_vac_md1_12Acut.out -c polyAT_vac_init_min.rst -p polyAT_vac.prmtop
> -r polyAT_vac_md1_12Acut.rst -x polyAT_vac_md1_12Acut.mdcrd tail -f
> polyAT_vac_md1_12Acut.out"
>
> It says tail cannot be recognized.
>
> I am looking forward to getting your reply on how to solve the problem.
>
> Cheers,
>
> Acoot
>
>
> ----- Original Message -----
> From: Acoot Brett <acootbrett.yahoo.com>
> To: AMBER Mailing List <amber.ambermd.org>
> Cc:
> Sent: Sunday, 8 April 2012 10:13 PM
> Subject: [AMBER] the command to make the sander running visible
>
> Dear All,
>
> As for the sander MD step usually takes a long time, it makes the computer
> looks like dead.
>
> Will you please tell me the sander command to show the sander MD process
> is on going, especially the sander command which indicates how much time
> left to complete the on-going sander step?
>
> Cheers,
>
> Acoot
>
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>
--
Aron Broom M.Sc
PhD Student
Department of Chemistry
University of Waterloo
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Received on Sun Apr 08 2012 - 07:30:04 PDT
