> I am now trying to identify small ligand cluster.
>
> Here I use "checkoverlap" in ptraj modules.
...
> I am feeling that "checkoverlap" checks not only real cell but also image
> cell.
Yes, by default this does check image cells since in fact images could
overlap... To avoid this, add the "noimage" keyword.
--tec3
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Received on Wed Oct 26 2011 - 14:00:02 PDT
