Dear experts
I am using MCPB to generate the parameters for 2 ZN in a complex with
protein, one ZN with 3SG of CYS and ND1 of HIS, the later connects to 3SG of
CYS in 1 protein and 1 SG of CYS in another protein.
Following the section 15.10 of MTKpp User manual, the
myProtein_sidechain.bcl is like this, isn't it?
copyStdResidue aminoAcids94/CYS NAME/SG1
copyStdResidue aminoAcids94/CYS NAME/SG2
copyStdResidue aminoAcids94/CYS NAME/SG3
copyStdResidue aminoAcids94/HIE NAME/ND1
copyStdResidue aminoAcids94/CYS NAME/SG4
copyStdResidue aminoAcids94/CYS NAME/SG5
copyStdResidue aminoAcids94/CYS NAME/SG6
copyStdResidue aminoAcids94/CYS NAME/SG7
copyStdResidue metals/.ZN NAME/ZN1
copyStdResidue metals/.ZN NAME/ZN2
Could you please explain me more detail on this file?
Thank you very much in any advance
best regards
Quy
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Received on Wed Apr 20 2011 - 09:30:03 PDT
