Re: [AMBER] odd output from rms measurement

From: 姜笑楠 <>
Date: Thu, 24 Mar 2011 15:31:34 +0800

I removed all the spaces and the result is the same as before.

input file

output file

发件人: Daniel Roe
发送时间: 2011-03-24 15:02:43
收件人: AMBER Mailing List
主题: Re: [AMBER] odd output from rms measurement
On Wed, Mar 23, 2011 at 8:35 PM, Jason Swails <> wrote:
> Dan or Tom would probably know this better than me, but it seems that the
> existence of spaces in the mask definition (without using "" to encompass
> them) could be problematic, as the parser would interpret that as different
> tokens. No guarantee this is true, since I'm not a ptraj expert.
Just to confirm, Jason is correct on this; ptraj will interpret
:1-112 @CA, C, N
as four separate tokens and will only use ":1-112" as the mask. Remove
the spaces to get ptraj to process the entire mask.
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Received on Thu Mar 24 2011 - 01:00:02 PDT
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