[AMBER] odd output from rms measurement

From: Chris Chris <alpharecept.yahoo.com>
Date: Wed, 23 Mar 2011 14:55:44 -0700 (PDT)

Can someone help me explain the attached graph? Basically, I'm simulating binding energies of a group of artificial peptides. I replaced the side chains of tropomyosin with the side chains of my peptides. I'm doing long production simulations so that the structure can 'acclimate' to my grafting of the new side chains 

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Received on Wed Mar 23 2011 - 15:00:03 PDT
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