Re: [AMBER] Assertion failed: nat < 5000, file makeDIST_RST

From: case <case.biomaps.rutgers.edu>
Date: Tue, 15 Mar 2011 20:51:21 -0400

On Wed, Mar 16, 2011, Andre Serobian wrote:
>
> I am trying to use makeDIST_RST for a pdb file that has approx. 20,000 atoms.
>
> The original global.h file has stated the maxatoms as 5000 and after
> changing this number in the file to something like 50,000 I still get
> the same error of:
> "Assertion failed: nat < 5000, file makeDIST_RST"
>
> Are there any other parameters I need to change in the global.h file or
> any other process I need to do which tells the program this number has
> changed?

This is very odd. Are you sure you re-compiled the program, and that you
are running the newly-compiled code? (Please double-check your timestamps
to be sure.) At the very top of the output file there should be a line
"Currently configured for up to xxxx atoms": is that number still 5000?

....dac


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Received on Tue Mar 15 2011 - 18:00:03 PDT
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