Re: [AMBER] Assertion failed: nat < 5000, file makeDIST_RST

From: Andre Serobian <>
Date: Wed, 16 Mar 2011 12:44:02 +1100

Thanks David,

yes, I did a make and make install in the directory and it worked.

So it seems to be working but an error comces up with the makeDIST_RST:

"Error no map function for H2'1 DT5"

Do you know what this means?

Kind regards,


----- Original Message -----
From: "case" <>
To: "AMBER Mailing List" <>
Sent: Wednesday, March 16, 2011 11:51 AM
Subject: Re: [AMBER] Assertion failed: nat < 5000, file makeDIST_RST

On Wed, Mar 16, 2011, Andre Serobian wrote:
> I am trying to use makeDIST_RST for a pdb file that has approx. 20,000
> atoms.
> The original global.h file has stated the maxatoms as 5000 and after
> changing this number in the file to something like 50,000 I still get
> the same error of:
> "Assertion failed: nat < 5000, file makeDIST_RST"
> Are there any other parameters I need to change in the global.h file or
> any other process I need to do which tells the program this number has
> changed?

This is very odd. Are you sure you re-compiled the program, and that you
are running the newly-compiled code? (Please double-check your timestamps
to be sure.) At the very top of the output file there should be a line
"Currently configured for up to xxxx atoms": is that number still 5000?


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