Thanks Daniel
You are right this may be bug error when I ran taht mdcrd file in cluster it was
fine
but when again ran in my local system gave the same warning.
But in my local system I already have applied all bugfix from
http://ambermd.org/bugfixesat.html
Whey then this error is?
> Hi,
>
> First, have you applied all bugfixes to AT 1.4?
>
> http://ambermd.org/bugfixesat.html
>
> Second, is there some reason to suspect that your trajectory is
> corrupted (as is indicated by the warning message)? If not, check to
> make sure your topology matches your trajectory (which can also cause
> that message).
>
> -Dan
>
> On Thu, Mar 3, 2011 at 7:33 AM, Sangita Kachhap <sangita.imtech.res.in> wrote:
>> Hello all
>> I am doing distance measurement betwen two atoms.
>> I have done it for a mdcrd file of 2ns run when I am doing for another which
>> is
>> in continuation
>> mdcrd file I am getting the following error:
>>
>> checkCoordinates(): Could not predict number of frames for AMBER trajectory
>> file: combined_md_prod7.mdcrd
>> If this is not a compressed file then there is a problem
>>
>> WARNING in transformDistance(): Blowing array; too many frames!!
>>
>>
>> WARNING in transformDistance(): Blowing array; too many frames!!
>>
>>
>> WARNING in transformDistance(): Blowing array; too many frames!!
>>
>>
>> WARNING in transformDistance(): Blowing array; too many frames!!
>>
>>
>> ERROR in safe_malloc: Error in alloc of -8 bytes
>>
>> Can anybody please suggest where is the problem.
>>
>>
>> With regard
>> Sangita Kachhap
>> JRF
>> BIC,IMTECH
>> CHANDIGARH
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
Sangita Kachhap
JRF
BIC,IMTECH
CHANDIGARH
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Received on Thu Mar 03 2011 - 08:30:04 PST
