Re: [AMBER] Blowing array; too many frames!!

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Thu, 3 Mar 2011 09:38:50 -0500

Hi,

First, have you applied all bugfixes to AT 1.4?

http://ambermd.org/bugfixesat.html

Second, is there some reason to suspect that your trajectory is
corrupted (as is indicated by the warning message)? If not, check to
make sure your topology matches your trajectory (which can also cause
that message).

-Dan

On Thu, Mar 3, 2011 at 7:33 AM, Sangita Kachhap <sangita.imtech.res.in> wrote:
> Hello all
> I am doing distance measurement betwen two atoms.
> I have done it for a mdcrd file of 2ns run when I am doing for another which is
> in continuation
> mdcrd file I am getting the following error:
>
> checkCoordinates(): Could not predict number of frames for AMBER trajectory
> file: combined_md_prod7.mdcrd
>        If this is not a compressed file then there is a problem
>
> WARNING in transformDistance(): Blowing array; too many frames!!
>
>
> WARNING in transformDistance(): Blowing array; too many frames!!
>
>
> WARNING in transformDistance(): Blowing array; too many frames!!
>
>
> WARNING in transformDistance(): Blowing array; too many frames!!
>
>
> ERROR in safe_malloc: Error in alloc of -8 bytes
>
> Can anybody please suggest where is the problem.
>
>
> With regard
> Sangita Kachhap
> JRF
> BIC,IMTECH
> CHANDIGARH
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>

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Received on Thu Mar 03 2011 - 07:00:03 PST
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