Hi,
First, have you applied all bugfixes to AT 1.4?
http://ambermd.org/bugfixesat.html
Second, is there some reason to suspect that your trajectory is
corrupted (as is indicated by the warning message)? If not, check to
make sure your topology matches your trajectory (which can also cause
that message).
-Dan
On Thu, Mar 3, 2011 at 7:33 AM, Sangita Kachhap <sangita.imtech.res.in> wrote:
> Hello all
> I am doing distance measurement betwen two atoms.
> I have done it for a mdcrd file of 2ns run when I am doing for another which is
> in continuation
> mdcrd file I am getting the following error:
>
> checkCoordinates(): Could not predict number of frames for AMBER trajectory
> file: combined_md_prod7.mdcrd
> If this is not a compressed file then there is a problem
>
> WARNING in transformDistance(): Blowing array; too many frames!!
>
>
> WARNING in transformDistance(): Blowing array; too many frames!!
>
>
> WARNING in transformDistance(): Blowing array; too many frames!!
>
>
> WARNING in transformDistance(): Blowing array; too many frames!!
>
>
> ERROR in safe_malloc: Error in alloc of -8 bytes
>
> Can anybody please suggest where is the problem.
>
>
> With regard
> Sangita Kachhap
> JRF
> BIC,IMTECH
> CHANDIGARH
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Mar 03 2011 - 07:00:03 PST
