Is the version of ptraj on your cluster that works from AT 1.4 with
all bugfixes applied?
-Dan
On Thu, Mar 3, 2011 at 10:59 AM, Sangita Kachhap <sangita.imtech.res.in> wrote:
> Thanks Daniel
> You are right this may be bug error when I ran taht mdcrd file in cluster it was
> fine
> but when again ran in my local system gave the same warning.
>
> But in my local system I already have applied all bugfix from
> http://ambermd.org/bugfixesat.html
>
> Whey then this error is?
>
>
>> Hi,
>>
>> First, have you applied all bugfixes to AT 1.4?
>>
>> http://ambermd.org/bugfixesat.html
>>
>> Second, is there some reason to suspect that your trajectory is
>> corrupted (as is indicated by the warning message)? If not, check to
>> make sure your topology matches your trajectory (which can also cause
>> that message).
>>
>> -Dan
>>
>> On Thu, Mar 3, 2011 at 7:33 AM, Sangita Kachhap <sangita.imtech.res.in> wrote:
>>> Hello all
>>> I am doing distance measurement betwen two atoms.
>>> I have done it for a mdcrd file of 2ns run when I am doing for another which
>>> is
>>> in continuation
>>> mdcrd file I am getting the following error:
>>>
>>> checkCoordinates(): Could not predict number of frames for AMBER trajectory
>>> file: combined_md_prod7.mdcrd
>>> If this is not a compressed file then there is a problem
>>>
>>> WARNING in transformDistance(): Blowing array; too many frames!!
>>>
>>>
>>> WARNING in transformDistance(): Blowing array; too many frames!!
>>>
>>>
>>> WARNING in transformDistance(): Blowing array; too many frames!!
>>>
>>>
>>> WARNING in transformDistance(): Blowing array; too many frames!!
>>>
>>>
>>> ERROR in safe_malloc: Error in alloc of -8 bytes
>>>
>>> Can anybody please suggest where is the problem.
>>>
>>>
>>> With regard
>>> Sangita Kachhap
>>> JRF
>>> BIC,IMTECH
>>> CHANDIGARH
>>>
>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
> Sangita Kachhap
> JRF
> BIC,IMTECH
> CHANDIGARH
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Mar 03 2011 - 08:30:14 PST
