Yes both have same version.
> Is the version of ptraj on your cluster that works from AT 1.4 with
> all bugfixes applied?
>
> -Dan
>
> On Thu, Mar 3, 2011 at 10:59 AM, Sangita Kachhap <sangita.imtech.res.in> wrote:
>> Thanks Daniel
>> You are right this may be bug error when I ran taht mdcrd file in cluster it
>> was
>> fine
>> but when again ran in my local system gave the same warning.
>>
>> But in my local system I already have applied all bugfix from
>> http://ambermd.org/bugfixesat.html
>>
>> Whey then this error is?
>>
>>
>>> Hi,
>>>
>>> First, have you applied all bugfixes to AT 1.4?
>>>
>>> http://ambermd.org/bugfixesat.html
>>>
>>> Second, is there some reason to suspect that your trajectory is
>>> corrupted (as is indicated by the warning message)? If not, check to
>>> make sure your topology matches your trajectory (which can also cause
>>> that message).
>>>
>>> -Dan
>>>
>>> On Thu, Mar 3, 2011 at 7:33 AM, Sangita Kachhap <sangita.imtech.res.in>
>>> wrote:
>>>> Hello all
>>>> I am doing distance measurement betwen two atoms.
>>>> I have done it for a mdcrd file of 2ns run when I am doing for another which
>>>> is
>>>> in continuation
>>>> mdcrd file I am getting the following error:
>>>>
>>>> checkCoordinates(): Could not predict number of frames for AMBER trajectory
>>>> file: combined_md_prod7.mdcrd
>>>> If this is not a compressed file then there is a problem
>>>>
>>>> WARNING in transformDistance(): Blowing array; too many frames!!
>>>>
>>>>
>>>> WARNING in transformDistance(): Blowing array; too many frames!!
>>>>
>>>>
>>>> WARNING in transformDistance(): Blowing array; too many frames!!
>>>>
>>>>
>>>> WARNING in transformDistance(): Blowing array; too many frames!!
>>>>
>>>>
>>>> ERROR in safe_malloc: Error in alloc of -8 bytes
>>>>
>>>> Can anybody please suggest where is the problem.
>>>>
>>>>
>>>> With regard
>>>> Sangita Kachhap
>>>> JRF
>>>> BIC,IMTECH
>>>> CHANDIGARH
>>>>
>>>>
>>>> _______________________________________________
>>>> AMBER mailing list
>>>> AMBER.ambermd.org
>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>>
>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
>>
>>
>> Sangita Kachhap
>> JRF
>> BIC,IMTECH
>> CHANDIGARH
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
Sangita Kachhap
JRF
BIC,IMTECH
CHANDIGARH
_______________________________________________
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http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Mar 03 2011 - 08:30:21 PST
