Re: [AMBER] phosphorylated residues

From: baljinder <baljinder7.gmail.com>
Date: Sat, 11 Dec 2010 11:27:12 +0530

Dear all,

Thank you all for suggestions.
In present problem and the way i tried to handle solution, suggestion
provided by Mr.Jason Swails was appropriate.

Warm Regards,
Baljinder K.Grewal


On Sat, Dec 11, 2010 at 1:00 AM, Jason Swails <jason.swails.gmail.com>wrote:

> On Fri, Dec 10, 2010 at 2:13 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
> > > (I also think prep files can have a defined connect0/connect1 or
> > head/tail)
> >
> > No, connect and head/tail atoms need to be assigned in leap, the concept
> > doesn't exist in prep.
> > Leap could be modified to automatically assign these to the first and
> > last 'M' (main chain) atoms, which may not cause any problems.
> >
>
> Ah, so I think wrong :). Wouldn't be the first time. Here I defer to the
> more experienced!
>
> All the best,
> Jason
>
>
> > Bill
> >
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> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Graduate Student
> 352-392-4032
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> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Fri Dec 10 2010 - 22:00:05 PST
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