Re: [AMBER] phosphorylated residues

From: Jason Swails <jason.swails.gmail.com>
Date: Fri, 10 Dec 2010 14:30:55 -0500

On Fri, Dec 10, 2010 at 2:13 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:

> > (I also think prep files can have a defined connect0/connect1 or
> head/tail)
>
> No, connect and head/tail atoms need to be assigned in leap, the concept
> doesn't exist in prep.
> Leap could be modified to automatically assign these to the first and
> last 'M' (main chain) atoms, which may not cause any problems.
>

Ah, so I think wrong :). Wouldn't be the first time. Here I defer to the
more experienced!

All the best,
Jason


> Bill
>
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-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Fri Dec 10 2010 - 12:00:02 PST
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