Dear Amber Users,
I have to calculate the RMSD of a loop of protein.
For the ptraj commant *'rms'* the manual says; *"This will RMS fit all the
atoms in the mask based on the current mode"*.
My doubt is whether to exclude those loop residues and include all others?
If so will it give the RMSD values for that loop?
Regards,
Soumya
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Received on Thu Oct 07 2010 - 10:00:05 PDT
