Dear Amber Users,
I have to calculate the RMSD of a particular part of protein.
For the ptraj commant *'rms'* the manual says; *"This will RMS fit all the
atoms in the mask based on the current mode"*.
My doubt is whether to exclude those particular residues and include all
others? If so will it give the RMSD values for that particular part?
Regards,
Soumya
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Oct 07 2010 - 01:00:02 PDT
