[AMBER] RMSD doubt

From: Soumya Lipsa Rath <soumyalipsabt.gmail.com>
Date: Thu, 7 Oct 2010 13:19:22 +0530

Dear Amber Users,

I have to calculate the RMSD of a particular part of protein.
For the ptraj commant *'rms'* the manual says; *"This will RMS fit all the
atoms in the mask based on the current mode"*.
My doubt is whether to exclude those particular residues and include all
others? If so will it give the RMSD values for that particular part?

Regards,

Soumya
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Received on Thu Oct 07 2010 - 01:00:02 PDT
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