Re: [AMBER] question about bond command

From: Philippe Pinard <>
Date: Sat, 24 Jul 2010 09:34:19 -0700 (PDT)

Thanks a lot. Very helpful.
Now as I am sure about my built structure. I want to perform calculations at
specific pH. How do I do this in Amber?

From: Bill Ross <ross.cgl.ucsf.EDU>
Sent: Fri, July 23, 2010 5:36:47 PM
Subject: Re: [AMBER] question about bond command

> How about one of my residues that has 4 bonds, Is
> it a must to use connecX, or bond command should give the right results?

ConnectX refers to a state that you confer on an atom,
where X is 0,1,2..

Bond is a command that connects 2 atoms with connectX


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