Re: [AMBER] compile ambertools on mac

From: Jorgen Simonsen <jorgen589.gmail.com>
Date: Tue, 13 Jul 2010 14:22:49 +0200

Hi

I deleted the suggested files and make clean - switch to the compiler sudo
gcc_select gcc42 and reconfigured. The files in the $AMBERHOME/lib are
regenerated upon compilation but it still terminates with the error
Undefined symbols and then exists compilation

On Tue, Jul 13, 2010 at 2:05 PM, case <case.biomaps.rutgers.edu> wrote:

> On Mon, Jul 12, 2010, Jorgen Simonsen wrote:
> >
> > I have deleted the suggested files
> > make clean
> >
> > remove config.h - reconfigured and then make install
> >
> > but I get the same error as earlier I have attached the log file from the
> > make install run if anybody can make sense of it.
>
> You are never compiling the fftw libraries, maybe because some files
> are still there are are not being cleaned. Take a look in $AMBERHOME/lib
> and look for any files with "fftw" in their name. Remove them, and see if
> that helps.
>
> Note to developers (Tyler, I guess): should not the "clean" target in
> amber11/AmberTools/src/fftw-2.1.5 also remove the .a files in
> $AMBERHOME/lib?
>
> ....dac
>
>
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Received on Tue Jul 13 2010 - 05:30:05 PDT
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