Re: [AMBER] compile ambertools on mac

From: case <>
Date: Tue, 13 Jul 2010 08:47:51 -0400

On Tue, Jul 13, 2010, Jorgen Simonsen wrote:
> I deleted the suggested files and make clean - switch to the compiler sudo
> gcc_select gcc42 and reconfigured. The files in the $AMBERHOME/lib are
> regenerated upon compilation but it still terminates with the error
> Undefined symbols and then exists compilation

I guess I give up....You could do a final check that "nm" still fails to
recognize symbols inside the fftw libraries in $AMBERHOME/lib. I guess you
could try to not use gcc42 to see if that helps.

The fftw package is a standard code (i.e. not written by Amber developers).
Apparently, your compiler appears to succeed in compiling it, but creates
bogus archive files. You could try to figure out what is actually in
$AMBERHOME/lib/libdrfftw.a. But it could be you have to use one of the
recommended compilers, as discussed on the Amber web site.


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Received on Tue Jul 13 2010 - 06:00:06 PDT
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