> Does anyone know, does VMD correctly display the periodic images of a
> truncated octahedral simulation cell created with leap? I see empty space
> in between the cells. This isn't right is it?
If the system is not equilibrated, one would expect to see a gap
between cells because of the way waters are placed initially.
This is why one needs constant pressure equilibration, to shrink
the box and lose vdw voids.
Bill
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Received on Mon Jun 21 2010 - 14:30:04 PDT
