thanx a lot for your valuable guidance.
On Tue, Jun 15, 2010 at 6:51 PM, case <case.biomaps.rutgers.edu> wrote:
> On Tue, Jun 15, 2010, shirishkumar pawar wrote:
>
> > i am first time amber user. i want to do nmr refinment of homology model
> of
> > one of the gpcr receptor. what all requirements are there for this work.
> now
> > i am following *AMBER ADVANCED WORKSHOP** TUTORIAL 4* for *AMBER
> Refinement
> > of a DNA Duplex*. will it be different in case of protein? can you
> suggest
> > any good tutorial for nmr refinment of a protein.
>
> The principles of NMR refinement are the same for proteins as for nucleic
> acids.
>
>
> > also as my protein is
> > gpcr, the no of amino acids are upto 370, so, how many days/months it
> will
> > take to complete this process?
>
> The actual calculations typically take a few hours per structure, and
> people
> often refine 100 structures or so, then choose the best dozen or two. But
> learning to create the input and intelligently run the jobs may be time
> consuming for a newcomer.
>
> ...good luck...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Jun 15 2010 - 22:30:03 PDT
