Re: [AMBER] regarding forcefield for rna

From: Jiri Sponer <sponer.ncbr.chemi.muni.cz>
Date: Wed, 9 Jun 2010 13:45:25 +0200 (MEST)

If this is quadruplex, do have ions inside the stem?
Jiri

[ Charset ISO-8859-1 unsupported, converting... ]
> Hey,
>
> I am doing MD for NMR structure of rna quadruplex under the above mentioned
> forcefields. The pdb file is given as attachment.
>
> At the beginning of the production run, the two strands of the quadruplex
> splits open.
>
> I used the standard procedure as given in tutorial.
>
> Kindly suggest a way out.
>
> Thanx..
> Asfa.

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Received on Thu Jun 10 2010 - 05:00:04 PDT
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