If this is quadruplex, do have ions inside the stem?
Jiri
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> Hey,
>
> I am doing MD for NMR structure of rna quadruplex under the above mentioned
> forcefields. The pdb file is given as attachment.
>
> At the beginning of the production run, the two strands of the quadruplex
> splits open.
>
> I used the standard procedure as given in tutorial.
>
> Kindly suggest a way out.
>
> Thanx..
> Asfa.
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Received on Thu Jun 10 2010 - 05:00:04 PDT
