Re: [AMBER] regarding forcefield for rna

From: Asfa Ali <asfa.iisc.gmail.com>
Date: Wed, 9 Jun 2010 17:05:21 +0530

Hey,

I am doing MD for NMR structure of rna quadruplex under the above mentioned
forcefields. The pdb file is given as attachment.

At the beginning of the production run, the two strands of the quadruplex
splits open.

I used the standard procedure as given in tutorial.

Kindly suggest a way out.

Thanx..
Asfa.


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Received on Wed Jun 09 2010 - 05:00:06 PDT
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