Re: [AMBER] rmsd problem

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Mon, 11 Jan 2010 10:15:10 -0800 (PST)

> ...So the problem might not be the relative motion but the different c=
> onformation sampled by each monomer.=A0 It is strange and very interesting =
> since it is homo-octomer protein and=A0 the coordinate are generated from s=
> ymmetry operation.

Did you add ions? That plus water placement to a lesser degree
could explain your asymmetry.

Bill

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Received on Mon Jan 11 2010 - 10:30:02 PST
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