Thanks for the suggestion. It is possible that water and ions cause the different behavior. I will check their postion to make sure.
s. Quoting Bill Ross <ross.cgl.ucsf.edu>:
>> ...So the problem might not be the relative motion but the different c=
>> onformation sampled by each monomer.=A0 It is strange and very interesting =
>> since it is homo-octomer protein and=A0 the coordinate are generated from s=
>> ymmetry operation.
>
> Did you add ions? That plus water placement to a lesser degree
> could explain your asymmetry.
>
> Bill
>
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Received on Mon Jan 11 2010 - 14:30:03 PST
