configure.h file (1)
###############################################################################
# (1) Location of the installation
BINDIR=/cygdrive/c/cygwin/home/amber11/bin
LIBDIR=/cygdrive/c/cygwin/home/amber11/lib
INCDIR=/cygdrive/c/cygwin/home/amber11/include
DATDIR=/cygdrive/c/cygwin/home/amber11/dat
NABHOME=/cygdrive/c/cygwin/home/amber11/dat
###############################################################################
strings nab.exe results:
%%%%%%%%%%%%
$.0.
$e0.
$ 5.
$.0.
<-tJ
$O2.
$.4.
$P4.
% a.
%pa.
%4a.
%ta.
%,a.
%ha.
%`a.
%la.
%\a.
%<a.
%Pa.
%Ta.
%xa.
%Xa.
C$,P.
540.
C8$5.
C.8Q.
A$,P.
%Ha.
$`4.
%da.
%|a.
%8a.
%Da.
%.a.
%0a.
%La.
cyggcc_s-1.dll
__register_frame_info
cyggcj-9.dll
_Jv_RegisterClasses
__deregister_frame_info
usage: %s [-avs] [-c] [-Dstring] [-noassert] [-nodebug] [-o file] [-v]
file(s)
%s: can't allocate arg mask
a.out
-avs
-cgdebug
-noassert
-nodebug
%s: -o requires file name
.nab
%s: only 1 of -c or -o can be used
/tmp/n2c_ofname_XXXXXX
%s: %s: no such file (arg # %d)
/cygdrive/c/cygwin/home/amber11/include
/cygdrive/c/cygwin/home/amber11/bin/ucpp -l
%s %s -I%s %s
cpp cmd: %s
/tmp/cpp_ofname_XXXXXX
cpp failed!
/cygdrive/c/cygwin/home/amber11/bin
%s/nab2c %s %s %s %s -nfname %s
nab2c cmd: %s
nab2c failed!
%s -I%s
-avs not supported.
libnab.a
/cygdrive/c/cygwin/home/amber11/lib
%s/%s
/cygdrive/c/cygwin/home/amber11/lib/libsym.a
/cygdrive/c/cygwin/home/amber11/lib/carpack.a
/cygdrive/c/cygwin/home/amber11/lib/clapack.a
/cygdrive/c/cygwin/home/amber11/lib/cblas.a
/cygdrive/c/cygwin/home/amber11/lib/f2c.a
/cygdrive/c/cygwin/home/amber11/lib/libmc.a
%s
-lm
cc cmd: %s
cc failed!
fork
VirtualQuery failed for %d bytes at address %p
Unknown pseudo relocation protocol version %d.
Unknown pseudo relocation bit size %d.
Cygwin runtime failure:
<unknown module>:
__getreent
__main
_dll_crt0.0
_impure_ptr
_lseek64
abort
access
calloc
close
cygwin_create_path
cygwin_detach_dll
cygwin_internal
dll_dllcrt0
execvp
exit
fork
fprintf
free
fwrite
malloc
memcpy
mkstemp
perror
realloc
sprintf
strcat
strchr
strcmp
strcpy
strlen
strncmp
strncpy
strpbrk
strrchr
strspn
unlink
vsnprintf
wait
__deregister_frame_info
__register_frame_info
GetModuleFileNameW
GetModuleHandleA
GetProcAddress
GetStdHandle
VirtualProtect
VirtualQuery
WriteFile
cygwin1.dll
cyggcc_s-1.dll
KERNEL32.dll
On Wed, Jan 6, 2010 at 10:17 AM, case <case.biomaps.rutgers.edu> wrote:
> On Wed, Jan 06, 2010, Lixia Jin Day wrote:
> > I used:
> >
> > export AMBERHOME=/cygdrive/c/cygwin/home/amber11
>
> This is pretty odd (more usual would be something like
> /home/<yourname>/amber11), but should be OK. Did you do this *before*
> compiling the codes?
>
> > > > $nab -v program_1.nab
>
> What does the command "which nab" return? Are you sure you have removed
> the earlier installation? Is it possible that you could be running an old
> version of nab by mistake?
>
> > > > cpp cmd: /bin/ucpp -l -I/include program_1.nab
>
> The fact that there is nothing before the "/bin/ucpp" is fixed at compile
> time. Please be sure the AMBERHOME is correctly set before you run the
> configure script. If you still have problems, please post section (1)
> of your config.h file. Or, examine the output of "strings nab.exe".
>
> ...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
http://public.fotki.com/lily1907/
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Received on Thu Jan 07 2010 - 13:00:03 PST
