AMBER: PROBLEM: AmberTools Installation using Ubuntu

From: Jens Lattig <Jens.Lattig.toulouse.inserm.fr>
Date: Fri, 06 Jun 2008 10:13:06 +0200

Hello!

I have a new problem, which I could not solve yet.

My System is Ubuntu 8.04 (Hardy Heron) installed on an Intel Core Duo.

I try to install AmberTools before going on to Amber10.

Finally, I made

   ./configure_at gcc

and

   make -f Makefile_at

run. I did not receive any obvious error message.

Unfortunatly, doing

   cd ../test
   make -f Makefile_at test

resulted in the following error(s):

   cc: /opt/amber10/lib/libnab.a: linker input file unused because linking not
   done
   cc: /opt/amber10/lib/libsym.a: linker input file unused because linking not
   done
   cc: /opt/amber10/lib/arpack.a: linker input file unused because linking not
   done
   cc: /opt/amber10/lib/lapack.a: linker input file unused because linking not
   done
   cc: /opt/amber10/lib/blas.a: linker input file unused because linking not
   done
   cc: /opt/amber10/lib/f2c.a: linker input file unused because linking not
   done
   /usr/bin/ld: cannot find -lmpi
   collect2: ld returned 1 exit status
   cc failed!
   /bin/sh: ./duplex: not found
   make[1]: *** [duplex_test] Error 127
   make[1]: Leaving directory `/opt/amber10/test/nab'
   make: *** [test.nab] Error 2

I was checking /opt/amber10/lib/ and all the files are there. Though,
I am not sure, if they become interpreted as links. What can I do?

Thank you in advance,

Jens



-- 
U858 INSERM I2MR, Equipe 13
1 avenue Jean Poulhès, BP 84225
31432 TOULOUSE Cedex 4
Phone   : +33(0)5.61.32.30.57
Email   : Jens.Lattig.toulouse.inserm.fr
Internet: http://i2mr.toulouse.inserm.fr
----------------------------------------------------------------
This message was sent using IMP, the Internet Messaging Program.
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
      to majordomo.scripps.edu
Received on Sun Jun 08 2008 - 06:07:49 PDT
Custom Search