AMBER: RMSD: is it related to flexibility?

From: a a <patd_2.hotmail.com>
Date: Wed, 04 Oct 2006 17:42:12 +0800

Dear All,

I got two protein structures with different performance on the loop
mobilitiy, one of them move very fast, another one is about 10 time less
flexible, based on our experimental data.

I could like to ask if it is sensible to do molecular dyanmics calculations
if I could like to get an explaination for these differences, how can I
determine the flexibility of a structure? Did the RMSD analysis could tell
the flexiblity of two loop?

Best regards,

Ann

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Received on Sun Oct 08 2006 - 06:07:03 PDT
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