Re: AMBER: RMSD: is it related to flexibility?

From: David A. Case <case.scripps.edu>
Date: Wed, 4 Oct 2006 08:08:32 -0700

On Wed, Oct 04, 2006, a a wrote:
>
> I got two protein structures with different performance on the loop
> mobilitiy, one of them move very fast, another one is about 10 time less
> flexible, based on our experimental data.

The answer probably depends on what kind of experimental data one is talking
about here; that will effectively determine what is being measured and
represented as "flexibility". And that, in turn, will help decide what sorts
of calculations might be relevant.

...regards...dac

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Received on Sun Oct 08 2006 - 06:07:07 PDT
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