Amber Archive Dec 2025: by subject

[AMBER] &wt type='rest' not applied in Amber22 pmemd.cuda
- David A Case via AMBER (Sat Dec 13 2025 - 08:32:27 PST)
- Emme Burgin via AMBER (Thu Dec 11 2025 - 08:36:38 PST)
[AMBER] Calculating a dot product between eigenvectors
- Daniel Roe via AMBER (Thu Dec 11 2025 - 05:40:36 PST)
- Osman, Roman via AMBER (Wed Dec 10 2025 - 19:29:58 PST)
[AMBER] Custom Caps in AMBER and Compatibility with GROMACS
[AMBER] Error while running MMPBSA using Amber16 input script on BRaF cluster
- Elvis Martis via AMBER (Tue Dec 30 2025 - 03:31:36 PST)
- YASHIKA . via AMBER (Tue Dec 30 2025 - 02:18:02 PST)
[AMBER] Error: Bad topology file. Sum of ATOMS_PER_MOLECULE does not equal NATOM
- Siavoush Dastmalchi via AMBER (Thu Dec 11 2025 - 04:34:39 PST)
[AMBER] Errors in MMPBSA
[AMBER] Invitation to BioEM
- Marek Malý via AMBER (Mon Dec 22 2025 - 04:22:53 PST)
[AMBER] Issue with MMGBSA Calculation for Protein–siRNA Complex
[AMBER] Issues with sander-ORCA interface when using ORCA 6.1.0
- 喵Junmin via AMBER (Fri Dec 19 2025 - 06:32:48 PST)
[AMBER] LINMIN failure
- Sangita Kachhap via AMBER (Wed Dec 03 2025 - 07:12:06 PST)
[AMBER] NetCDF Format Error When Using mpirun with sander, and CPU Usage Query
- David A Case via AMBER (Sun Dec 21 2025 - 06:40:38 PST)
- Tan Rua via AMBER (Sun Dec 21 2025 - 01:19:10 PST)
[AMBER] Old Amber installation
- PIETRO DAL CIN via AMBER (Thu Dec 18 2025 - 08:20:05 PST)
[AMBER] OPC water model misread by NAMD
- Guillaume Petit via AMBER (Wed Dec 24 2025 - 00:44:28 PST)
[AMBER] pmemd.cuda.MPI run stops (amber24)
[AMBER] Query regarding AMBER24 - "KMMD" CMAKE ERROR - Requesting clarification.
[AMBER] Question: Box size change during parametrization of rbLDH in 1M trehalose
[AMBER] Radius of phosphate
- David A Case via AMBER (Sat Dec 06 2025 - 10:06:59 PST)
- Reza Khayat via AMBER (Fri Dec 05 2025 - 12:01:05 PST)
[AMBER] Request download AmberTools24 source code
- David A Case via AMBER (Sat Dec 06 2025 - 10:03:27 PST)
- Arsene Marian Alain via AMBER (Thu Dec 04 2025 - 01:21:21 PST)
[AMBER] Umbrella Sampling | WHAM
- mish via AMBER (Tue Dec 16 2025 - 09:01:05 PST)

Amber Archive Dec 2025 by subject