[AMBER] How to parametrize these RNA structure with "N" bases in the structure

From: Debarati DasGupta via AMBER <amber.ambermd.org>
Date: Thu, 22 May 2025 20:53:38 +0000

I am trying to run a simulation using PDB IDs (6E1V and 6E1S) what are those 3 N bases in the structure?
I am having a hard time understanding those and setting them up in tleap?


Thanks,
Debarati
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Received on Thu May 22 2025 - 14:00:02 PDT