if you look in the original article for that structure, you will find this
comment:
To alleviate competition by the intramolecular interaction with binding of
the exogenous ligand, we designed aptamer domains in which the nucleobase
at position 14, as well as one or two adjacent disordered loop nucleobases
were removed.
On Thu, May 22, 2025 at 4:54 PM Debarati DasGupta via AMBER <
amber.ambermd.org> wrote:
> I am trying to run a simulation using PDB IDs (6E1V and 6E1S) what are
> those 3 N bases in the structure?
> I am having a hard time understanding those and setting them up in tleap?
>
>
> Thanks,
> Debarati
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Received on Thu May 22 2025 - 14:30:05 PDT
