[AMBER] Protein RNA complex simulation best standards in the field.

Contemporary messages sorted: [ by date ] [ by thread ] [ by subject ] [ by author ] [ by messages with attachments ]

From: Debarati DasGupta via AMBER <amber.ambermd.org>
Date: Tue, 27 Aug 2024 23:16:40 +0000

Hi all,
I am trying to gain some insights on how best to proceed with some protein RNA complex simulations. What forcefields are recommended? I am assuming we have to use either ff14SB or 19SB as the RNA-OL3 can only parametrize RNA bases? Any ideas/suggestions. Do's and Don'ts will be much appreciated.

Thanks
Debarati
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Aug 27 2024 - 16:30:02 PDT