Hi Debarati,
You may find this tutorial helpful from the great folks in the York group: https://ambertutorials-rutgerslbsr-c744272d5a9c1169e0dc9e19b8d800019105.gitlab.io/workshop/02_intoMD/MTR1/Build_MTR1.html
Best,
Matthew
On Aug 27, 2024, at 7:16 PM, Debarati DasGupta via AMBER <amber.ambermd.org> wrote:
Hi all,
I am trying to gain some insights on how best to proceed with some protein RNA complex simulations. What forcefields are recommended? I am assuming we have to use either ff14SB or 19SB as the RNA-OL3 can only parametrize RNA bases? Any ideas/suggestions. Do's and Don'ts will be much appreciated.
Thanks
Debarati
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Received on Tue Aug 27 2024 - 19:30:02 PDT