There are not set measurements for these, but you can probably get whet you
need either distance measure.
On Fri, Jun 21, 2024, 12:58 PM Sayan Poddar via AMBER <amber.ambermd.org>
wrote:
> Dear AMBER developers and Users,
>
> Is there any syntax for calculating hydrophobic interaction and ionic
> interaction between ligand and protein in *cpptraj, *similar to hydrogen
> bond calculation?
>
> Thank you
>
> --
> *with regards*
> *Sayan Poddar*
>
> *PhD Research Scholar*
> *Department of Biosciences and Biomedical Engineering*
> *Indian Institute of Technology Indore*
> *India*
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Received on Sat Jun 22 2024 - 15:30:02 PDT
