We were contacted. We're trying to figure it out. Thanks!
On Mon, Oct 30, 2023 at 4:12 PM David A Case via AMBER
<amber.ambermd.org> wrote:
>
> On Sun, Oct 29, 2023, Natesan Mani via AMBER wrote:
>
> >I was trying to build a glycoprotein on GLYCAMM. I was able to construct
> >all the necessary glcyans and also found the glycosylation sites to be
> >active. However, when I download the file, there are no glycans on it and I
> >only get the pdf files, I also need the prmtop and inpcrd files. Could you
> >please help me in solving this!
>
> Sounds like you may need to contact the GLYCAM server folks. Try to be more
> specific in explaining what you did, and what went wrong. Saying "download
> the file" (what file?) doesn't help much; tell the GLYCAM people exactly
> what you tried, and what the results were.
>
> Getting a pdb file sounds like what you want, since then you can use tleap
> to create the prmtop/inpcrd files. But if there are no glycans in the PDB
> file, then something more is needed.
>
> ...good luck...dac
>
>
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--
:-) Lachele
Lachele Foley
CCRC/UGA
Athens, GA USA
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Received on Tue Oct 31 2023 - 00:00:02 PDT
