On Mon, Oct 30, 2023, Priyasha Majee via AMBER wrote:
>
>
>
>I am working with a 22-mer DNA sequence. I have added a modification
>at 12th position and named it as BF.
>Even after making bonds between the required atoms, I am getting a TER
>card after BF-12 which is creating a break in the DNA.
Can you say what commands you used to create the PDB file you attached?
>Also I am not
>able to get the prmtop and inpcrd file for this.
Why not? What did you try (exactly) and what was the result?
...dac
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Received on Mon Oct 30 2023 - 13:30:03 PDT
