On Sun, Oct 29, 2023, Natesan Mani via AMBER wrote:
>I was trying to build a glycoprotein on GLYCAMM. I was able to construct
>all the necessary glcyans and also found the glycosylation sites to be
>active. However, when I download the file, there are no glycans on it and I
>only get the pdf files, I also need the prmtop and inpcrd files. Could you
>please help me in solving this!
Sounds like you may need to contact the GLYCAM server folks. Try to be more
specific in explaining what you did, and what went wrong. Saying "download
the file" (what file?) doesn't help much; tell the GLYCAM people exactly
what you tried, and what the results were.
Getting a pdb file sounds like what you want, since then you can use tleap
to create the prmtop/inpcrd files. But if there are no glycans in the PDB
file, then something more is needed.
...good luck...dac
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Received on Mon Oct 30 2023 - 13:30:02 PDT
